Personally, I think you're making it too complicated. Is that 9 drain lines going into you sump?! Why?
First, every piece of "extra" equipment you put on the system has to pay for itself, or it is not worth it. So, the electrical consumption of a skimmer and light for Chaeto has to save you a certain amount of money in salt for waterchanges to be worth running either one of those. In my experiments, neither a skimmer nor a macroalgae light pay for themselves.
Second, the reason biomedia is often put before the skimmer is so that you can use the aggressive water movement of the overflow drain to feed the biomedia. The more flow the biomedia has the better it works (within reason). My sumps all run like this: filter pad, bioballs, skimmer (if used), return chamber. I do all of this in 40-gallon sumps. Fwiw, I've found (cheap) bioballs work just as well as ceramic rings/hexes/etc. In my systems, 4 gallons of bioballs is enough for 12 heavily stocked 20-gallon aquariums provided flow through the bioballs is thought out so there aren't dead zones and the bioballs aren't packed tight.
I put 100-150 fish per tank doesn't matter what size they are. They are transferred from larvae tank to growout, and they aren't thinned out when they are bigger. I don't have any rock in my growout systems. I have a measly, cheap Quiet One 6000 pump on each of my 12x20gal growout systems, and it pumps up just under 7 feet. The Quiet Ones add a lot of heat to the system, so they help keep temperature up. I do bottom vacuuming during twice weekly waterchanges, but the bigger fish churn the water enough that not much settles. The smaller fish need the bottom vacuuming more.
Also, think about waterchanges. Design your system so that waterchanges are easy. If you pack that many fish into your growout you will be doing 75% waterchanges twice a week. My tanks are all drilled in the bottom. I pull the stand pipe and the tank drains to the sump. There is a "tee" on the return line just above the return pump and ball valves to control which way the flow goes. The "tee" goes to a garden hose that goes to a (septic) drain. I also have a siphon hose to a floor drain for bottom vacuuming. I don't pack any buckets, and a 160-gallon waterchange takes me about 35 minutes.
The simpler you keep it, the less money you spend, the more money you could make. My way isn't the be all end all. I'm no expert, but my way works well, and doesn't cost a fortune.